Variant report

Variant	rs73850446
Chromosome Location	chr3:80003006-80003007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55730539	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56055599	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58800496	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58911301	1.00[EUR][1000 genomes]
rs59737693	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850442	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73850448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73850468	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73850471	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73850472	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73850478	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73850483	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850484	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009391	chr3:79604443-80035898	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428088	chr3:79934080-80112721	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590740	chr3:79999534-80575042	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:80002400-80003400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:80002400-80003400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:80002400-80004200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:80002600-80003200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:80002600-80003200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr3:80002600-80003200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr3:80002600-80004200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:80002800-80003200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:80002800-80003600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr3:80002800-80003600	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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