Variant report

Variant	rs73854857
Chromosome Location	chr3:119268155-119268156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:119266723..119269020-chr3:119275024..119276759,2	K562	blood:
2	chr3:119259605..119262258-chr3:119264714..119268687,3	MCF-7	breast:
3	chr3:119259493..119262118-chr3:119265783..119269575,3	K562	blood:

Variant related genes	Relation type
ENSG00000121594	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11915800	1.00[EUR][1000 genomes]
rs11918611	1.00[EUR][1000 genomes]
rs11919422	1.00[EUR][1000 genomes]
rs11927159	1.00[EUR][1000 genomes]
rs11927863	1.00[EUR][1000 genomes]
rs12106815	1.00[EUR][1000 genomes]
rs12106869	1.00[EUR][1000 genomes]
rs13317715	1.00[EUR][1000 genomes]
rs16830032	1.00[EUR][1000 genomes]
rs58318736	1.00[EUR][1000 genomes]
rs61575899	1.00[EUR][1000 genomes]
rs6767853	1.00[EUR][1000 genomes]
rs72968486	1.00[EUR][1000 genomes]
rs73857025	1.00[EUR][1000 genomes]
rs7611869	1.00[EUR][1000 genomes]
rs9821005	1.00[EUR][1000 genomes]
rs9860332	1.00[EUR][1000 genomes]
rs9861284	1.00[EUR][1000 genomes]
rs9861344	1.00[EUR][1000 genomes]
rs9866191	1.00[EUR][1000 genomes]
rs9876397	1.00[EUR][1000 genomes]
rs9876408	1.00[EUR][1000 genomes]
rs9876504	1.00[EUR][1000 genomes]
rs9881550	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829695	chr3:119178890-119367996	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv1831824	chr3:119263607-119402474	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119245200-119276600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:119263800-119268400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr3:119267200-119268400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr3:119267600-119298000	Weak transcription	Fetal Lung	lung
5	chr3:119268000-119271000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood

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