Variant report

Variant	rs73855394
Chromosome Location	chr3:121177986-121177987
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs3218652	1.00[AMR][1000 genomes]
rs58297766	1.00[AMR][1000 genomes]
rs58466835	1.00[AMR][1000 genomes]
rs58525071	1.00[AMR][1000 genomes]
rs58881799	1.00[AMR][1000 genomes]
rs58922309	1.00[AMR][1000 genomes]
rs60108064	1.00[AMR][1000 genomes]
rs60204652	1.00[AMR][1000 genomes]
rs61004683	1.00[AMR][1000 genomes]
rs61040872	1.00[AMR][1000 genomes]
rs72971952	1.00[AMR][1000 genomes]
rs72971955	1.00[AMR][1000 genomes]
rs73855356	1.00[AMR][1000 genomes]
rs73855359	1.00[AMR][1000 genomes]
rs73855360	1.00[AMR][1000 genomes]
rs73855361	1.00[AMR][1000 genomes]
rs73855375	1.00[AMR][1000 genomes]
rs73855376	1.00[AMR][1000 genomes]
rs73855378	1.00[AMR][1000 genomes]
rs73855380	1.00[AMR][1000 genomes]
rs73855381	1.00[AMR][1000 genomes]
rs73855385	1.00[AMR][1000 genomes]
rs73855388	1.00[AMR][1000 genomes]
rs73855389	1.00[AMR][1000 genomes]
rs73855390	1.00[AMR][1000 genomes]
rs73855391	1.00[AMR][1000 genomes]
rs73855392	1.00[AMR][1000 genomes]
rs73855395	1.00[AMR][1000 genomes]
rs73855396	1.00[AMR][1000 genomes]
rs73855397	1.00[AMR][1000 genomes]
rs73855399	1.00[AMR][1000 genomes]
rs73855400	1.00[AMR][1000 genomes]
rs73855402	1.00[AMR][1000 genomes]
rs73857903	1.00[AMR][1000 genomes]
rs73857906	1.00[AMR][1000 genomes]
rs73857907	1.00[AMR][1000 genomes]
rs73857909	1.00[AMR][1000 genomes]
rs73857910	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998555	chr3:120700604-121348015	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv521397	chr3:120970900-121192350	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv591395	chr3:120970900-121501070	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv591396	chr3:120970900-121557533	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv591397	chr3:120977383-121505882	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv829702	chr3:121045793-121227975	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv591400	chr3:121070299-121339354	Strong transcription Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv999335	chr3:121100283-121408766	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:121139200-121186000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:121141200-121186000	Weak transcription	NHEK	skin
3	chr3:121146000-121185800	Weak transcription	Fetal Stomach	stomach
4	chr3:121146200-121185600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr3:121146400-121185800	Weak transcription	Fetal Intestine Large	intestine
6	chr3:121148400-121199600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:121149400-121181000	Weak transcription	HMEC	breast
8	chr3:121149400-121196600	Weak transcription	NH-A	brain
9	chr3:121149400-121199600	Weak transcription	Fetal Lung	lung
10	chr3:121151200-121185800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:121151200-121193400	Weak transcription	HSMM	muscle
12	chr3:121151200-121263800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr3:121151400-121185600	Weak transcription	HUVEC	blood vessel
14	chr3:121167200-121178800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr3:121168600-121184600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr3:121171600-121185400	Weak transcription	HepG2	liver
17	chr3:121171600-121186200	Weak transcription	Fetal Intestine Small	intestine
18	chr3:121174400-121178000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr3:121175400-121185800	Weak transcription	NHDF-Ad	bronchial
20	chr3:121176200-121197000	Weak transcription	Fetal Kidney	kidney
21	chr3:121176400-121178800	Weak transcription	Fetal Brain Female	brain
22	chr3:121176400-121214800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr3:121176400-121224200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr3:121176800-121186000	Weak transcription	Primary T cells from cord blood	blood
25	chr3:121176800-121187600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr3:121177200-121178000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:121177200-121178000	Strong transcription	Primary hematopoietic stem cells	blood
28	chr3:121177200-121237000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr3:121177400-121178000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
30	chr3:121177400-121178000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:121177400-121178000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
32	chr3:121177400-121178000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
33	chr3:121177400-121178000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr3:121177400-121178000	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr3:121177400-121178000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr3:121177400-121178000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr3:121177400-121178000	Strong transcription	Fetal Heart	heart
38	chr3:121177400-121178000	Strong transcription	Fetal Muscle Leg	muscle
39	chr3:121177400-121178000	ZNF genes & repeats	GM12878-XiMat	blood
40	chr3:121177400-121178200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
41	chr3:121177400-121178200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr3:121177400-121178200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr3:121177400-121178400	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr3:121177400-121178400	ZNF genes & repeats	Dnd41	blood
45	chr3:121177400-121179200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr3:121177400-121179200	Strong transcription	Fetal Thymus	thymus
47	chr3:121177400-121179400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr3:121177400-121179400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr3:121177400-121179400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr3:121177400-121179600	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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