Variant report

Variant	rs73855804
Chromosome Location	chr3:81872483-81872484
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56714425	1.00[AFR][1000 genomes]
rs56871093	1.00[AFR][1000 genomes]
rs61684628	1.00[AFR][1000 genomes]
rs73853903	1.00[AFR][1000 genomes]
rs73855805	1.00[AFR][1000 genomes]
rs73855806	1.00[AFR][1000 genomes]
rs73855817	1.00[AFR][1000 genomes]
rs73855821	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81870000-81873200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:81870800-81872600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:81871000-81873800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:81871000-81874400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:81871200-81872600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:81871400-81872800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:81871600-81872600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:81871600-81872800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:81871600-81872800	Weak transcription	Brain Substantia Nigra	brain
10	chr3:81871600-81873000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:81871600-81873000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:81871800-81872800	Weak transcription	Brain Anterior Caudate	brain
13	chr3:81871800-81872800	Enhancers	GM12878-XiMat	blood
14	chr3:81871800-81873400	Enhancers	Liver	Liver
15	chr3:81872200-81873200	Enhancers	Brain Hippocampus Middle	brain
16	chr3:81872200-81873200	Weak transcription	Dnd41	blood
17	chr3:81872200-81873800	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr3:81872400-81872600	Enhancers	Psoas Muscle	Psoas
19	chr3:81872400-81873000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr3:81872400-81873000	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr3:81872400-81873200	Weak transcription	Pancreas	Pancrea
22	chr3:81872400-81873600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr3:81872400-81874000	Enhancers	Fetal Heart	heart
24	chr3:81872400-81874400	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links