Variant report

Variant	rs73855817
Chromosome Location	chr3:81886636-81886637
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56714425	1.00[AFR][1000 genomes]
rs56871093	1.00[AFR][1000 genomes]
rs61684628	1.00[AFR][1000 genomes]
rs73853903	1.00[AFR][1000 genomes]
rs73855804	1.00[AFR][1000 genomes]
rs73855805	1.00[AFR][1000 genomes]
rs73855806	1.00[AFR][1000 genomes]
rs73855821	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81885200-81889000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:81885400-81889600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:81885800-81888400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:81886000-81886800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:81886200-81887600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:81886400-81887000	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr3:81886400-81887800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:81886600-81887600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:81886600-81889400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr3:81886600-81891600	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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