Variant report
| Variant | rs73856310 |
|---|---|
| Chromosome Location | chr4:118237183-118237184 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TRAM1L1-1 | chr4:118237001-118237304 | XLOC_004051 |
| 2 | lnc-TRAM1L1-1 | chr4:118237001-118237315 | XLOC_004051 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:2)
| rs_ID | r2[population] |
|---|---|
| rs73856307 | 1.00[AFR][1000 genomes] |
| rs73856314 | 0.91[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879822 | chr4:118122688-118239302 | Weak transcription ZNF genes & repeats Active TSS Enhancers | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv879823 | chr4:118122688-118244984 | Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1000847 | chr4:118186059-118285838 | Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 4 | nsv508307 | chr4:118217007-118239370 | Enhancers | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
