Variant report

Variant	rs73859109
Chromosome Location	chr4:160151324-160151325
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55760378	1.00[AMR][1000 genomes]
rs73859104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73859110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73859111	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73859118	1.00[AMR][1000 genomes]
rs73859123	1.00[AMR][1000 genomes]
rs73859128	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016150	chr4:159995816-160165156	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830129	chr4:160061694-160270760	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	esv1795614	chr4:160142544-160161916	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160133400-160171600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr4:160134200-160156600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:160138000-160156000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:160148600-160152000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:160148600-160152000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:160148600-160152200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:160148600-160152200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr4:160148600-160152400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:160149000-160152000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:160149000-160153000	Active TSS	Right Ventricle	heart
11	chr4:160149200-160151800	Active TSS	Fetal Intestine Large	intestine
12	chr4:160149200-160152000	Active TSS	Hela-S3	cervix
13	chr4:160149400-160152000	Active TSS	Fetal Muscle Leg	muscle
14	chr4:160149400-160152000	Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr4:160149400-160152400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:160149400-160152400	Active TSS	Fetal Heart	heart
17	chr4:160149400-160152400	Active TSS	Right Atrium	heart
18	chr4:160149400-160164000	Weak transcription	K562	blood
19	chr4:160149400-160169600	Weak transcription	Pancreas	Pancrea
20	chr4:160149400-160171800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr4:160149400-160172000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr4:160149400-160173000	Weak transcription	Placenta	Placenta
23	chr4:160149400-160216800	Weak transcription	Small Intestine	intestine
24	chr4:160149600-160151400	Enhancers	Placenta Amnion	Placenta Amnion
25	chr4:160149600-160151600	Enhancers	Fetal Lung	lung
26	chr4:160149600-160171800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr4:160149800-160154200	Weak transcription	Liver	Liver
28	chr4:160149800-160154400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr4:160150000-160151400	Enhancers	Brain Cingulate Gyrus	brain
30	chr4:160150000-160151600	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr4:160150400-160152000	Enhancers	H9 Cell Line	embryonic stem cell
32	chr4:160150400-160153400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr4:160150600-160153600	Weak transcription	Psoas Muscle	Psoas
34	chr4:160150600-160172000	Weak transcription	Lung	lung
35	chr4:160150800-160151400	Enhancers	Brain Substantia Nigra	brain
36	chr4:160150800-160151600	Weak transcription	Left Ventricle	heart
37	chr4:160150800-160151800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr4:160150800-160152000	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr4:160150800-160152200	Enhancers	Colon Smooth Muscle	Colon
40	chr4:160150800-160152200	Active TSS	NHLF	lung
41	chr4:160150800-160152400	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr4:160150800-160153800	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr4:160150800-160154400	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr4:160150800-160156400	Weak transcription	Brain Anterior Caudate	brain
45	chr4:160150800-160156400	Weak transcription	HepG2	liver
46	chr4:160150800-160158200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr4:160150800-160162200	Weak transcription	NHDF-Ad	bronchial
48	chr4:160150800-160162400	Weak transcription	Brain Angular Gyrus	brain
49	chr4:160150800-160168400	Weak transcription	NH-A	brain
50	chr4:160150800-160172000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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