Variant report

Variant	rs73859111
Chromosome Location	chr4:160183020-160183021
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55760378	1.00[AMR][1000 genomes]
rs73859104	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73859109	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73859110	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73859118	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73859123	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73859128	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830129	chr4:160061694-160270760	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160149400-160216800	Weak transcription	Small Intestine	intestine
2	chr4:160167400-160186400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:160169800-160187800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:160170000-160187200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:160170200-160188000	Weak transcription	Fetal Kidney	kidney
6	chr4:160170400-160183200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr4:160170400-160186400	Weak transcription	Fetal Brain Male	brain
8	chr4:160170400-160188000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr4:160170400-160188400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr4:160170400-160192800	Weak transcription	Primary T cells from cord blood	blood
11	chr4:160170600-160183200	Weak transcription	NHDF-Ad	bronchial
12	chr4:160170600-160188000	Weak transcription	Osteobl	bone
13	chr4:160170600-160188200	Weak transcription	Psoas Muscle	Psoas
14	chr4:160171200-160183200	Weak transcription	Brain Anterior Caudate	brain
15	chr4:160172600-160188200	Weak transcription	Pancreas	Pancrea
16	chr4:160172600-160193000	Weak transcription	Gastric	stomach
17	chr4:160173000-160193200	Weak transcription	Thymus	Thymus
18	chr4:160173200-160183400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr4:160173200-160187800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr4:160173200-160188200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr4:160173200-160188600	Weak transcription	Lung	lung
22	chr4:160173200-160192400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr4:160173200-160217400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr4:160173400-160188000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr4:160173400-160188000	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr4:160173400-160188000	Weak transcription	Fetal Stomach	stomach
27	chr4:160173400-160188000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr4:160173400-160188200	Weak transcription	Right Ventricle	heart
29	chr4:160173400-160188400	Weak transcription	Fetal Muscle Leg	muscle
30	chr4:160173400-160188400	Weak transcription	GM12878-XiMat	blood
31	chr4:160173400-160188400	Weak transcription	HSMM	muscle
32	chr4:160173400-160192600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr4:160173400-160194000	Weak transcription	Fetal Intestine Large	intestine
34	chr4:160173400-160194800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr4:160173600-160188400	Weak transcription	Fetal Intestine Small	intestine
36	chr4:160174000-160203400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr4:160174400-160183200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr4:160174400-160183400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr4:160174600-160186200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr4:160175400-160186400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr4:160176400-160186000	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr4:160177600-160183200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr4:160177600-160185800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr4:160177600-160187800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr4:160178000-160183400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr4:160178600-160186600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr4:160178600-160187200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:160178600-160188600	Weak transcription	Primary hematopoietic stem cells	blood
49	chr4:160178800-160188200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr4:160179000-160187400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links