Variant report
| Variant | rs73859714 |
|---|---|
| Chromosome Location | chr4:150183345-150183346 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NR3C2-9 | chr4:150183251-150183387 | NONHSAT098715 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs17025665 | 1.00[AMR][1000 genomes] |
| rs17025715 | 1.00[AMR][1000 genomes] |
| rs17025719 | 1.00[AMR][1000 genomes] |
| rs17026040 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56259048 | 1.00[AMR][1000 genomes] |
| rs56981343 | 1.00[AMR][1000 genomes] |
| rs6838932 | 1.00[AMR][1000 genomes] |
| rs73857884 | 1.00[AMR][1000 genomes] |
| rs73857899 | 1.00[AMR][1000 genomes] |
| rs73857900 | 1.00[AMR][1000 genomes] |
| rs7680442 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1022438 | chr4:150066349-150196711 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv880248 | chr4:150092178-150200706 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv880249 | chr4:150156579-150280221 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1016977 | chr4:150173255-150605595 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv537298 | chr4:150173255-150605595 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
