Variant report

Variant	rs73863914
Chromosome Location	chr3:136429076-136429077
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136399125..136401891-chr3:136427700..136429759,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55891699	0.93[AFR][1000 genomes]
rs59318336	0.85[AFR][1000 genomes]
rs73863627	0.87[AFR][1000 genomes]
rs73863628	0.87[AFR][1000 genomes]
rs73864640	0.86[AFR][1000 genomes]
rs73864641	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136390800-136447800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:136411000-136444400	Weak transcription	Fetal Lung	lung
3	chr3:136413400-136447200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:136413800-136447800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:136415200-136444600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr3:136415200-136446000	Weak transcription	Thymus	Thymus
7	chr3:136415400-136430200	Weak transcription	Psoas Muscle	Psoas
8	chr3:136415400-136431000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:136415400-136444400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:136415400-136444400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr3:136415400-136447200	Weak transcription	NHDF-Ad	bronchial
12	chr3:136415400-136447600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:136416200-136435600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr3:136416200-136444200	Weak transcription	Primary B cells from cord blood	blood
15	chr3:136416400-136431400	Weak transcription	Dnd41	blood
16	chr3:136416800-136444200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr3:136418000-136435400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr3:136418000-136444400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr3:136418200-136435400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr3:136418600-136431400	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr3:136418600-136431800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr3:136418800-136431800	Weak transcription	Aorta	Aorta
23	chr3:136418800-136434000	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr3:136419000-136430600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr3:136419000-136430600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:136420000-136431600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr3:136420200-136435600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr3:136420600-136439000	Weak transcription	Colon Smooth Muscle	Colon
29	chr3:136421000-136430200	Weak transcription	Fetal Intestine Small	intestine
30	chr3:136421600-136444200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr3:136421800-136435200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr3:136422400-136430000	Weak transcription	Primary T cells from cord blood	blood
33	chr3:136422400-136430200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:136422400-136432800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr3:136422400-136438200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr3:136423000-136431000	Weak transcription	Fetal Thymus	thymus
37	chr3:136423400-136444600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr3:136425000-136430200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr3:136425000-136430200	Weak transcription	Pancreas	Pancrea
40	chr3:136425000-136436200	Weak transcription	Left Ventricle	heart
41	chr3:136425200-136430200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr3:136425800-136435400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr3:136426000-136440800	Weak transcription	Brain Germinal Matrix	brain
44	chr3:136426600-136439200	Weak transcription	Adipose Nuclei	Adipose
45	chr3:136426600-136453400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr3:136426800-136430000	Weak transcription	HepG2	liver
47	chr3:136426800-136431600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr3:136426800-136441400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr3:136426800-136444400	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr3:136427600-136431400	Weak transcription	Fetal Muscle Leg	muscle

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