Variant report

Variant	rs73864640
Chromosome Location	chr3:136647158-136647159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF2	chr3:136647143-136647300	Hela-S3	cervix:	n/a	n/a
2	EBF1	chr3:136647130-136647415	GM12878	blood:	n/a	n/a
3	WRNIP1	chr3:136647151-136647329	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
NCK1	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73863914	0.86[AFR][1000 genomes]
rs73864641	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877531	chr3:136517016-136662954	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv877532	chr3:136526939-136662603	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv877533	chr3:136539689-136662954	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136613200-136648800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr3:136619200-136656800	Weak transcription	NHLF	lung
3	chr3:136624200-136664400	Weak transcription	Aorta	Aorta
4	chr3:136626000-136661600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:136626400-136648800	Weak transcription	HMEC	breast
6	chr3:136626400-136649200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:136626600-136650600	Weak transcription	Esophagus	oesophagus
8	chr3:136626600-136661000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:136628800-136650600	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:136632600-136657000	Weak transcription	HepG2	liver
11	chr3:136633800-136660200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr3:136634000-136648200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:136634800-136650200	Weak transcription	HSMM	muscle
14	chr3:136634800-136656800	Weak transcription	NH-A	brain
15	chr3:136635000-136656600	Weak transcription	K562	blood
16	chr3:136636600-136648800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr3:136636800-136649400	Weak transcription	Right Ventricle	heart
18	chr3:136637600-136652000	Weak transcription	Brain Substantia Nigra	brain
19	chr3:136637600-136661400	Weak transcription	Left Ventricle	heart
20	chr3:136638000-136648400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:136638800-136648800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr3:136638800-136648800	Weak transcription	NHEK	skin
23	chr3:136638800-136664400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr3:136639000-136664400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:136640400-136655000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr3:136640600-136647800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr3:136640800-136650600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr3:136641000-136652000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr3:136641000-136652600	Weak transcription	Fetal Stomach	stomach
30	chr3:136641000-136670000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr3:136641800-136649200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr3:136641800-136656200	Weak transcription	HUVEC	blood vessel
33	chr3:136643600-136647200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr3:136643800-136651800	Weak transcription	HSMMtube	muscle
35	chr3:136643800-136655400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr3:136643800-136661400	Weak transcription	Small Intestine	intestine
37	chr3:136644000-136648800	Weak transcription	Brain Anterior Caudate	brain
38	chr3:136644600-136647200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr3:136644600-136656800	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr3:136644800-136648400	Weak transcription	Adipose Nuclei	Adipose
41	chr3:136644800-136648800	Weak transcription	Colon Smooth Muscle	Colon
42	chr3:136644800-136648800	Weak transcription	Rectal Smooth Muscle	rectum
43	chr3:136644800-136652000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr3:136645000-136648600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr3:136645000-136648600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr3:136645000-136650000	Weak transcription	Brain Germinal Matrix	brain
47	chr3:136645000-136652000	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr3:136645000-136655400	Weak transcription	Fetal Brain Female	brain
49	chr3:136645400-136664200	Weak transcription	Placenta	Placenta
50	chr3:136645800-136664600	Weak transcription	Fetal Muscle Trunk	muscle

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