Variant report

Variant	rs73867572
Chromosome Location	chr3:146092451-146092452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11928697	0.86[AFR][1000 genomes]
rs56162947	1.00[AFR][1000 genomes]
rs56354966	0.93[AFR][1000 genomes]
rs58038409	0.81[AFR][1000 genomes]
rs60356977	0.81[AFR][1000 genomes]
rs73867568	1.00[AFR][1000 genomes]
rs73867570	1.00[AFR][1000 genomes]
rs73867571	1.00[AFR][1000 genomes]
rs73867573	1.00[AFR][1000 genomes]
rs73867574	1.00[AFR][1000 genomes]
rs73867577	1.00[AFR][1000 genomes]
rs73867579	1.00[AFR][1000 genomes]
rs73867582	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv536759	chr3:146087689-146123589	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1011893	chr3:146090110-146125010	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146090600-146093000	Enhancers	Fetal Lung	lung
2	chr3:146090800-146093200	Enhancers	Fetal Stomach	stomach
3	chr3:146091200-146092600	Weak transcription	Ovary	ovary
4	chr3:146091600-146093200	Enhancers	HSMMtube	muscle
5	chr3:146091600-146094800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:146091800-146092800	Enhancers	Colon Smooth Muscle	Colon
7	chr3:146091800-146092800	Enhancers	A549	lung
8	chr3:146091800-146093200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:146092000-146094000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr3:146092400-146092800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:146092400-146093000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:146092400-146093200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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