Variant report

Variant	rs73867568
Chromosome Location	chr3:146087176-146087177
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11928697	0.86[AFR][1000 genomes]
rs56162947	1.00[AFR][1000 genomes]
rs56354966	0.93[AFR][1000 genomes]
rs58038409	0.81[AFR][1000 genomes]
rs60356977	0.81[AFR][1000 genomes]
rs73867570	1.00[AFR][1000 genomes]
rs73867571	1.00[AFR][1000 genomes]
rs73867572	1.00[AFR][1000 genomes]
rs73867573	1.00[AFR][1000 genomes]
rs73867574	1.00[AFR][1000 genomes]
rs73867577	1.00[AFR][1000 genomes]
rs73867579	1.00[AFR][1000 genomes]
rs73867582	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146086400-146087200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:146086400-146088600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:146086800-146087400	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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