Variant report

Variant	rs73870349
Chromosome Location	chr3:141459212-141459213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:141455674..141460093-chr3:141592801..141597430,19	MCF-7	breast:
2	chr3:141452499..141459593-chr3:141591792..141599045,17	MCF-7	breast:
3	chr3:141458745..141461557-chr3:141613414..141615464,2	K562	blood:
4	chr3:141457377..141459578-chr3:141597906..141599752,2	MCF-7	breast:
5	chr3:141455466..141460652-chr3:141593125..141598625,15	K562	blood:
6	chr3:141378869..141381397-chr3:141457213..141459259,2	MCF-7	breast:
7	chr3:141457369..141459692-chr3:141539013..141541965,2	MCF-7	breast:
8	chr3:141455463..141459614-chr3:141593520..141599146,20	K562	blood:
9	chr3:141455584..141459326-chr3:141464266..141467931,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000114125	Chromatin interaction
ENSG00000069849	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73872311	0.81[AFR][1000 genomes]
rs73872313	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv877552	chr3:141420562-141466147	Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141456600-141460000	Active TSS	Brain Hippocampus Middle	brain
2	chr3:141457600-141459600	Flanking Active TSS	Primary hematopoietic stem cells	blood
3	chr3:141457600-141460400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:141458000-141461400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:141458200-141459600	Flanking Active TSS	Primary T cells from cord blood	blood
6	chr3:141458200-141459600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr3:141458200-141460000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr3:141458200-141460200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
9	chr3:141458200-141460200	Enhancers	Fetal Heart	heart
10	chr3:141458200-141461000	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr3:141458200-141470400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:141458400-141459400	Flanking Active TSS	HMEC	breast
13	chr3:141458400-141459600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr3:141458400-141459600	Flanking Active TSS	Dnd41	blood
15	chr3:141458400-141460000	Enhancers	Brain Substantia Nigra	brain
16	chr3:141458400-141460200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:141458400-141460200	Enhancers	Liver	Liver
18	chr3:141458400-141460200	Flanking Active TSS	NHEK	skin
19	chr3:141458400-141460400	Enhancers	Primary B cells from peripheral blood	blood
20	chr3:141458400-141460600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:141458400-141463600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr3:141458400-141464000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr3:141458600-141459400	Enhancers	Primary B cells from cord blood	blood
24	chr3:141458600-141459400	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr3:141458600-141459400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr3:141458600-141459400	Enhancers	Fetal Stomach	stomach
27	chr3:141458600-141459600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr3:141458600-141459600	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr3:141458600-141460200	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr3:141458600-141460200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:141458600-141460200	Enhancers	Fetal Lung	lung
32	chr3:141458600-141460400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr3:141458600-141460400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
34	chr3:141458600-141460400	Enhancers	Adipose Nuclei	Adipose
35	chr3:141458600-141461400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr3:141458600-141463200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr3:141458600-141468000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr3:141458800-141459600	Weak transcription	Aorta	Aorta
39	chr3:141458800-141459600	Weak transcription	Brain Angular Gyrus	brain
40	chr3:141458800-141459600	Enhancers	Fetal Brain Male	brain
41	chr3:141458800-141459800	Weak transcription	Brain Cingulate Gyrus	brain
42	chr3:141458800-141459800	Enhancers	Colon Smooth Muscle	Colon
43	chr3:141458800-141459800	Weak transcription	Ovary	ovary
44	chr3:141458800-141459800	Flanking Active TSS	HUVEC	blood vessel
45	chr3:141458800-141460200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr3:141458800-141460200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr3:141458800-141460400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr3:141458800-141460400	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr3:141458800-141460400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr3:141458800-141460400	Enhancers	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links