Variant report

Variant	rs73872313
Chromosome Location	chr3:141484160-141484161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141467540..141469826-chr3:141482977..141484600,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73870349	0.81[AFR][1000 genomes]
rs73870351	0.83[AFR][1000 genomes]
rs73872307	0.90[AFR][1000 genomes]
rs73872310	0.90[AFR][1000 genomes]
rs73872311	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141461800-141498200	Weak transcription	Right Ventricle	heart
2	chr3:141470000-141486400	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:141472000-141500800	Weak transcription	Thymus	Thymus
4	chr3:141472600-141484800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:141482400-141484600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr3:141482400-141485800	Weak transcription	Gastric	stomach
7	chr3:141482400-141488200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:141482600-141487200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:141483000-141484800	Enhancers	Fetal Kidney	kidney
10	chr3:141483400-141484400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr3:141483400-141484400	Enhancers	Fetal Stomach	stomach
12	chr3:141483400-141484600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:141483400-141484600	Enhancers	Fetal Lung	lung
14	chr3:141483400-141485000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr3:141483400-141487200	Enhancers	Primary hematopoietic stem cells	blood
16	chr3:141483400-141487600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:141483400-141488000	Weak transcription	K562	blood
18	chr3:141483600-141484400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr3:141483600-141484400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr3:141483600-141484600	Enhancers	Fetal Thymus	thymus
21	chr3:141483800-141484200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:141484000-141484200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr3:141484000-141484200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr3:141484000-141484200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:141484000-141484400	Enhancers	Lung	lung

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