Variant report

Variant	rs73870351
Chromosome Location	chr3:141462286-141462287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3AK20	chr3:141461930-141462580	MCF-7	breast:	n/a	n/a
2	EP300	chr3:141462083-141462619	T-47D	breast:	n/a	chr3:141462402-141462410 chr3:141462338-141462348
3	GATA3	chr3:141462202-141462511	MCF-7	breast:	n/a	n/a
4	CTCF	chr3:141462200-141462350	NHDF-neo	bronchial:	n/a	n/a
5	TCF7L2	chr3:141462039-141462542	MCF-7	breast:	n/a	chr3:141462275-141462289
6	FOXA1	chr3:141462207-141462482	T-47D	breast:	n/a	n/a
7	FOXA1	chr3:141462175-141462444	HepG2	liver:	n/a	n/a
8	E2F4	chr3:141462278-141462547	MCF10A-Er-Src	breast:	n/a	n/a
9	JUND	chr3:141462011-141462516	T-47D	breast:	n/a	n/a
10	GATA3	chr3:141462117-141462529	MCF-7	breast:	n/a	n/a
11	NR2F2	chr3:141462098-141462562	MCF-7	breast:	n/a	n/a
12	GATA3	chr3:141462090-141462767	MCF-7	breast:	n/a	n/a
13	GATA3	chr3:141461943-141462583	T-47D	breast:	n/a	n/a
14	FOXA1	chr3:141462064-141462633	T-47D	breast:	n/a	n/a
15	FOXA1	chr3:141462083-141462621	HepG2	liver:	n/a	n/a
16	TCF7L2	chr3:141462251-141462679	HEK293	kidney:	n/a	chr3:141462275-141462289
17	GATA3	chr3:141462073-141462617	MCF-7	breast:	n/a	n/a
18	GATA3	chr3:141462017-141462545	T-47D	breast:	n/a	n/a
19	FOXA2	chr3:141462233-141462486	HepG2	liver:	n/a	n/a
20	FOXA1	chr3:141462231-141462508	HepG2	liver:	n/a	n/a
21	CEBPB	chr3:141462155-141462641	MCF-7	breast:	n/a	n/a
22	FOXA1	chr3:141462091-141462563	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141460791..141464587-chr3:141594120..141597016,3	MCF-7	breast:
2	chr3:141460404..141464291-chr3:141593804..141597029,4	MCF-7	breast:

Variant related genes	Relation type
RNF7	TF binding region
ENSG00000069849	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73872311	0.83[AFR][1000 genomes]
rs73872313	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv877552	chr3:141420562-141466147	Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141458200-141470400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:141458400-141463600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:141458400-141464000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:141458600-141463200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:141458600-141468000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:141458800-141470800	Weak transcription	Stomach Mucosa	stomach
7	chr3:141459000-141462400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:141459000-141463200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:141459000-141463400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:141459000-141463600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:141459000-141463600	Weak transcription	Esophagus	oesophagus
12	chr3:141459000-141465600	Weak transcription	Lung	lung
13	chr3:141459000-141465800	Weak transcription	Gastric	stomach
14	chr3:141459400-141464000	Weak transcription	Fetal Stomach	stomach
15	chr3:141459600-141463400	Weak transcription	Fetal Brain Female	brain
16	chr3:141459600-141464200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr3:141459600-141470800	Weak transcription	Fetal Brain Male	brain
18	chr3:141459800-141463400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr3:141460000-141463600	Weak transcription	Fetal Kidney	kidney
20	chr3:141460000-141467000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:141460200-141463200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr3:141460200-141463400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr3:141460200-141463400	Weak transcription	Thymus	Thymus
24	chr3:141460200-141463400	Weak transcription	HMEC	breast
25	chr3:141460200-141463600	Weak transcription	Colonic Mucosa	Colon
26	chr3:141460200-141464000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr3:141460200-141464000	Weak transcription	HSMMtube	muscle
28	chr3:141460200-141466000	Weak transcription	Ovary	ovary
29	chr3:141460200-141466400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr3:141460200-141468000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr3:141460200-141468200	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr3:141460200-141469800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:141460400-141463000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr3:141460400-141463000	Weak transcription	Adipose Nuclei	Adipose
35	chr3:141460400-141463200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr3:141460400-141463200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr3:141460400-141463200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr3:141460400-141463400	Weak transcription	Fetal Muscle Leg	muscle
39	chr3:141460400-141463400	Weak transcription	Left Ventricle	heart
40	chr3:141460400-141463400	Weak transcription	Rectal Smooth Muscle	rectum
41	chr3:141460400-141463400	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr3:141460400-141463600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
43	chr3:141460400-141463800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr3:141460400-141464000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr3:141460400-141464000	Weak transcription	Spleen	Spleen
46	chr3:141460400-141465800	Weak transcription	Aorta	Aorta
47	chr3:141460400-141465800	Weak transcription	Psoas Muscle	Psoas
48	chr3:141460400-141466000	Weak transcription	Small Intestine	intestine
49	chr3:141460400-141472400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr3:141460600-141462800	Weak transcription	Primary hematopoietic stem cells	blood

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