Variant report

Variant	rs73872333
Chromosome Location	chr4:174008420-174008421
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs56768552	0.91[AFR][1000 genomes]
rs56944780	1.00[AMR][1000 genomes]
rs59102843	1.00[AMR][1000 genomes]
rs60717105	1.00[AMR][1000 genomes]
rs61707572	1.00[AMR][1000 genomes]
rs6828299	1.00[AMR][1000 genomes]
rs6831583	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6845484	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73870539	1.00[AMR][1000 genomes]
rs73870595	1.00[AMR][1000 genomes]
rs73872315	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73872316	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73872317	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73872325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73872345	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7665795	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7674207	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7698179	1.00[AMR][1000 genomes]
rs9683990	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174000000-174012600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:174006000-174011600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:174006000-174012600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:174007600-174020400	Weak transcription	Stomach Mucosa	stomach
5	chr4:174008400-174012600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links