Variant report

Variant	rs7674207
Chromosome Location	chr4:174012821-174012822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs56768552	0.94[AFR][1000 genomes]
rs56944780	1.00[AMR][1000 genomes]
rs59102843	1.00[AMR][1000 genomes]
rs60717105	1.00[AMR][1000 genomes]
rs61707572	1.00[AMR][1000 genomes]
rs6828299	1.00[AMR][1000 genomes]
rs6831583	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6845484	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73870539	1.00[AMR][1000 genomes]
rs73870595	1.00[AMR][1000 genomes]
rs73872315	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73872316	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73872317	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73872325	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73872333	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73872345	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7665795	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7698179	1.00[AMR][1000 genomes]
rs9683990	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174007600-174020400	Weak transcription	Stomach Mucosa	stomach
2	chr4:174012200-174016800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:174012400-174013000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr4:174012400-174013000	Enhancers	Brain Germinal Matrix	brain
5	chr4:174012400-174013400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:174012400-174013600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr4:174012400-174013600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:174012400-174014200	Enhancers	K562	blood
9	chr4:174012600-174013000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:174012600-174013000	Enhancers	Brain Substantia Nigra	brain
11	chr4:174012600-174013200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr4:174012600-174013200	Enhancers	Fetal Thymus	thymus
13	chr4:174012600-174013400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:174012600-174013400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr4:174012600-174014800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr4:174012600-174015000	Enhancers	H1 Cell Line	embryonic stem cell
17	chr4:174012600-174015000	Enhancers	H9 Cell Line	embryonic stem cell
18	chr4:174012600-174015000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr4:174012600-174015200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr4:174012600-174015600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:174012800-174013000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr4:174012800-174013000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr4:174012800-174015000	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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