Variant report

Variant	rs73873404
Chromosome Location	chr3:155431158-155431159
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs56402298	0.84[AFR][1000 genomes]
rs57856083	0.92[AFR][1000 genomes]
rs61631059	0.84[AFR][1000 genomes]
rs73873406	0.84[AFR][1000 genomes]
rs73874897	0.92[AFR][1000 genomes]
rs73876903	0.92[AFR][1000 genomes]
rs73876906	0.92[AFR][1000 genomes]
rs73876908	1.00[AFR][1000 genomes]
rs73876909	1.00[AFR][1000 genomes]
rs73876914	1.00[AFR][1000 genomes]
rs73876915	1.00[AFR][1000 genomes]
rs73876923	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv829763	chr3:155417552-155470079	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155412600-155437400	Weak transcription	Pancreas	Pancrea
2	chr3:155413800-155432000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:155420200-155432200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:155423000-155431200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:155423200-155431400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:155423200-155431400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:155423200-155432200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:155423400-155431200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:155426400-155431800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:155428000-155431400	Weak transcription	Fetal Intestine Small	intestine
11	chr3:155430400-155431400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:155430400-155431400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:155430400-155431600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:155430400-155432200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:155430600-155432800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:155431000-155431200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:155431000-155432200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr3:155431000-155432200	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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