Variant report

Variant	rs73876915
Chromosome Location	chr3:155400425-155400426
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs56402298	0.84[AFR][1000 genomes]
rs57856083	0.92[AFR][1000 genomes]
rs61631059	0.84[AFR][1000 genomes]
rs73873404	1.00[AFR][1000 genomes]
rs73873406	0.84[AFR][1000 genomes]
rs73874897	0.92[AFR][1000 genomes]
rs73876903	0.92[AFR][1000 genomes]
rs73876906	0.92[AFR][1000 genomes]
rs73876908	1.00[AFR][1000 genomes]
rs73876909	1.00[AFR][1000 genomes]
rs73876914	1.00[AFR][1000 genomes]
rs73876923	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155395000-155416800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:155395200-155412000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:155399400-155400800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:155399400-155401000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:155399400-155401000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr3:155399600-155400600	Enhancers	Fetal Intestine Small	intestine
7	chr3:155399600-155401000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:155399800-155422000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:155400000-155400600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr3:155400000-155400600	Enhancers	Primary hematopoietic stem cells	blood
11	chr3:155400000-155400800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr3:155400200-155400600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:155400200-155400600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:155400200-155400600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:155400200-155400800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr3:155400400-155400600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr3:155400400-155400600	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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