Variant report
| Variant | rs73873759 |
|---|---|
| Chromosome Location | chr3:156709735-156709736 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000239706 | TF binding region |
| ENSG00000197980 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs13319332 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16827128 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73873757 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73873778 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73873780 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7623552 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7643607 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9819460 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9825405 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9827477 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9840315 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9864185 | 1.00[AMR][1000 genomes] |
| rs9867779 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829765 | chr3:156568263-156718496 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv3349885 | chr3:156685409-156878910 | Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 141 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:156705200-156717200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
