Variant report

Variant	rs7643607
Chromosome Location	chr3:156748381-156748382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13319332	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16827128	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873757	1.00[AMR][1000 genomes]
rs73873759	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873778	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873780	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7623552	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7643488	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs9819460	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9825405	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs9827477	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9840315	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9864185	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9867779	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156746200-156748800	Enhancers	Primary B cells from peripheral blood	blood
2	chr3:156746800-156749400	Enhancers	Primary B cells from cord blood	blood
3	chr3:156747600-156748600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:156748000-156748600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:156748000-156748800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:156748000-156748800	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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