Variant report

Variant	rs73877969
Chromosome Location	chr3:160528212-160528213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160521593..160523754-chr3:160526329..160528531,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16847253	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59252691	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59936930	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60834651	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6441332	1.00[AMR][1000 genomes]
rs73877955	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7640802	0.82[AFR][1000 genomes]
rs7644033	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160520400-160529600	Weak transcription	Colonic Mucosa	Colon
2	chr3:160522800-160529000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:160523000-160532800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:160523200-160528600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:160525800-160528800	Enhancers	Liver	Liver
6	chr3:160525800-160529000	Enhancers	Brain Cingulate Gyrus	brain
7	chr3:160525800-160529000	Enhancers	Brain Hippocampus Middle	brain
8	chr3:160525800-160530200	Enhancers	Adipose Nuclei	Adipose
9	chr3:160525800-160530400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:160525800-160530600	Enhancers	Fetal Brain Female	brain
11	chr3:160525800-160530800	Enhancers	Fetal Brain Male	brain
12	chr3:160526000-160528400	Enhancers	Aorta	Aorta
13	chr3:160526000-160528400	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr3:160526000-160528400	Enhancers	Left Ventricle	heart
15	chr3:160526000-160528600	Enhancers	Brain Substantia Nigra	brain
16	chr3:160526000-160528800	Enhancers	Brain Angular Gyrus	brain
17	chr3:160526000-160528800	Enhancers	Fetal Muscle Leg	muscle
18	chr3:160526000-160529200	Enhancers	Rectal Smooth Muscle	rectum
19	chr3:160526000-160530200	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr3:160526000-160530600	Enhancers	Colon Smooth Muscle	Colon
21	chr3:160526200-160528600	Enhancers	Ovary	ovary
22	chr3:160526400-160530600	Enhancers	Brain Anterior Caudate	brain
23	chr3:160526600-160528400	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr3:160526600-160529000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:160526600-160529800	Enhancers	NHDF-Ad	bronchial
26	chr3:160526600-160530400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr3:160526600-160530400	Weak transcription	Fetal Heart	heart
28	chr3:160526800-160529800	Weak transcription	Gastric	stomach
29	chr3:160527200-160528600	Enhancers	Right Ventricle	heart
30	chr3:160527200-160528600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
31	chr3:160527400-160528400	Weak transcription	Brain Germinal Matrix	brain
32	chr3:160527400-160528600	Enhancers	HSMMtube	muscle
33	chr3:160527400-160529200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:160527400-160530600	Enhancers	Stomach Smooth Muscle	stomach
35	chr3:160527600-160529600	Enhancers	Muscle Satellite Cultured Cells	--
36	chr3:160527600-160529600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr3:160527800-160528400	Weak transcription	Pancreas	Pancrea
38	chr3:160527800-160530600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr3:160528000-160528800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr3:160528000-160529600	Weak transcription	Psoas Muscle	Psoas
41	chr3:160528200-160529600	Weak transcription	Right Atrium	heart
42	chr3:160528200-160530200	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr3:160528200-160537600	Weak transcription	Hela-S3	cervix

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