Variant report

Variant	rs73877955
Chromosome Location	chr3:160514332-160514333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160513259..160516252-chr3:160518883..160520924,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16847253	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56141969	0.88[AFR][1000 genomes]
rs59252691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59936930	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60834651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6441332	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73877969	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7640802	0.88[AFR][1000 genomes]
rs7644033	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160498400-160522600	Weak transcription	Right Ventricle	heart
2	chr3:160503600-160514600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:160509000-160522600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:160509600-160519000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:160511200-160515000	Enhancers	Fetal Heart	heart
6	chr3:160511400-160518400	Weak transcription	Primary T cells from cord blood	blood
7	chr3:160511800-160519800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:160512200-160515600	Enhancers	Stomach Mucosa	stomach
9	chr3:160512600-160514400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:160512600-160515600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:160512800-160514400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr3:160512800-160519400	Weak transcription	Colon Smooth Muscle	Colon
13	chr3:160513200-160515200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr3:160513400-160519000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:160513400-160522600	Weak transcription	Pancreas	Pancrea
16	chr3:160513600-160514400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr3:160513600-160515600	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr3:160513800-160514400	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr3:160513800-160515600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr3:160513800-160519600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr3:160514000-160514600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:160514000-160514600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:160514000-160514600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:160514000-160514800	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr3:160514000-160514800	Enhancers	Right Atrium	heart
26	chr3:160514000-160515400	Enhancers	Liver	Liver
27	chr3:160514000-160515400	Enhancers	Hela-S3	cervix
28	chr3:160514000-160515600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:160514000-160515600	Enhancers	Adipose Nuclei	Adipose
30	chr3:160514200-160514400	Enhancers	Pancreatic Islets	Pancreatic Islet
31	chr3:160514200-160514800	Enhancers	HepG2	liver
32	chr3:160514200-160515400	Weak transcription	Psoas Muscle	Psoas
33	chr3:160514200-160520000	Weak transcription	Left Ventricle	heart

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