Variant report

Variant	rs56141969
Chromosome Location	chr3:160477670-160477671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160475234..160478424-chr3:160481295..160484751,3	MCF-7	breast:
2	chr3:160475052..160477817-chr3:160492377..160494723,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1563385	1.00[ASN][1000 genomes]
rs16847253	0.90[AFR][1000 genomes]
rs59252691	0.88[AFR][1000 genomes]
rs59936930	0.86[AFR][1000 genomes]
rs60834651	0.88[AFR][1000 genomes]
rs6441332	0.93[AFR][1000 genomes]
rs724961	0.91[ASN][1000 genomes]
rs73877955	0.88[AFR][1000 genomes]
rs7632089	1.00[ASN][1000 genomes]
rs7640802	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7644033	0.93[AFR][1000 genomes]
rs9825763	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160472000-160477800	Active TSS	Brain Angular Gyrus	brain
2	chr3:160472000-160477800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:160472200-160477800	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr3:160475600-160478200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr3:160475600-160478800	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr3:160475800-160497200	Weak transcription	Left Ventricle	heart
7	chr3:160476000-160478200	Enhancers	Colon Smooth Muscle	Colon
8	chr3:160476000-160480800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:160476000-160496400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr3:160476200-160479200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr3:160477200-160479600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:160477400-160477800	Flanking Active TSS	Fetal Brain Female	brain
13	chr3:160477400-160478000	Enhancers	Brain Germinal Matrix	brain
14	chr3:160477400-160478000	Enhancers	Psoas Muscle	Psoas
15	chr3:160477400-160478400	Enhancers	Fetal Brain Male	brain
16	chr3:160477400-160489600	Weak transcription	Fetal Heart	heart
17	chr3:160477600-160477800	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr3:160477600-160478000	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr3:160477600-160478000	Enhancers	Dnd41	blood
20	chr3:160477600-160478400	Active TSS	Stomach Smooth Muscle	stomach
21	chr3:160477600-160483000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:160477600-160489800	Weak transcription	Brain Anterior Caudate	brain
23	chr3:160477600-160497000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:160477600-160498200	Weak transcription	Stomach Mucosa	stomach

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