Variant report
| Variant | rs9825763 |
|---|---|
| Chromosome Location | chr3:160442150-160442151 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10513554 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs13325080 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs1447612 | 1.00[CEU][hapmap] |
| rs1455870 | 0.82[CHB][hapmap] |
| rs1455871 | 0.82[CHB][hapmap] |
| rs1563385 | 0.91[ASN][1000 genomes] |
| rs16831372 | 1.00[EUR][1000 genomes] |
| rs16831442 | 0.82[CHB][hapmap] |
| rs16831516 | 0.82[CHB][hapmap] |
| rs16831520 | 0.82[CHB][hapmap] |
| rs17289334 | 0.82[JPT][hapmap] |
| rs2068817 | 0.82[CHB][hapmap] |
| rs4627794 | 1.00[CHB][hapmap] |
| rs56141969 | 0.91[ASN][1000 genomes] |
| rs59167416 | 1.00[EUR][1000 genomes] |
| rs6771910 | 0.82[CHB][hapmap] |
| rs724961 | 1.00[ASN][1000 genomes] |
| rs7632089 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs7633401 | 0.82[CHB][hapmap] |
| rs7634059 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7640802 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs980430 | 0.81[ASN][1000 genomes] |
| rs9811521 | 1.00[EUR][1000 genomes] |
| rs9814292 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs9815207 | 1.00[EUR][1000 genomes] |
| rs9825674 | 1.00[EUR][1000 genomes] |
| rs9825742 | 1.00[EUR][1000 genomes] |
| rs9830968 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs9843371 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs9844901 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9845637 | 1.00[EUR][1000 genomes] |
| rs9857284 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs9862846 | 1.00[EUR][1000 genomes] |
| rs9879415 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532666 | chr3:159777847-160703202 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 271 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:160438200-160443000 | Weak transcription | NHEK | skin |
| 2 | chr3:160440400-160443000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
