Variant report

Variant	rs9830968
Chromosome Location	chr3:160413079-160413080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:160412784-160413150	A549	lung:	n/a	n/a
2	ZNF143	chr3:160413015-160413215	Hela-S3	cervix:	n/a	n/a
3	JUND	chr3:160412859-160413211	HepG2	liver:	n/a	chr3:160413032-160413041 chr3:160412993-160413002
4	POLR2A	chr3:160412970-160413193	Gliobla	brain:	n/a	n/a
5	MXI1	chr3:160412928-160414108	Hela-S3	cervix:	n/a	n/a
6	POLR2A	chr3:160412773-160413150	MCF-7	breast:	n/a	n/a
7	TFAP2C	chr3:160412099-160414278	Hela-S3	cervix:	n/a	n/a
8	GTF2F1	chr3:160412979-160413242	Hela-S3	cervix:	n/a	n/a
9	MYC	chr3:160412991-160413079	MCF-7	breast:	n/a	n/a
10	MYC	chr3:160412922-160413081	MCF-7	breast:	n/a	n/a
11	RFX5	chr3:160413017-160414161	Hela-S3	cervix:	n/a	n/a
12	CHD2	chr3:160412904-160413142	Hela-S3	cervix:	n/a	n/a
13	POLR2A	chr3:160412751-160413152	MCF-7	breast:	n/a	n/a
14	CEBPB	chr3:160412871-160414297	Hela-S3	cervix:	n/a	n/a
15	JUND	chr3:160412847-160413200	K562	blood:	n/a	chr3:160413032-160413041 chr3:160412993-160413002
16	CREB1	chr3:160412723-160413300	K562	blood:	n/a	chr3:160412991-160413004 chr3:160413030-160413043
17	MAX	chr3:160412893-160413137	Hela-S3	cervix:	n/a	n/a
18	MAZ	chr3:160412987-160413239	Hela-S3	cervix:	n/a	n/a
19	JUN	chr3:160412949-160413155	HepG2	liver:	n/a	chr3:160413028-160413041 chr3:160413032-160413041 chr3:160412993-160413002
20	STAT1	chr3:160411921-160413235	Hela-S3	cervix:	n/a	chr3:160412496-160412504 chr3:160411930-160411942
21	TFAP2A	chr3:160412143-160413264	Hela-S3	cervix:	n/a	chr3:160412364-160412379
22	CREB1	chr3:160412807-160413234	K562	blood:	n/a	chr3:160412991-160413004 chr3:160413030-160413043
23	MAFK	chr3:160412871-160414397	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:160411138..160414125-chr3:160416765..160419218,2	K562	blood:
2	chr3:160411890..160413956-chr3:160423439..160425541,2	K562	blood:
3	chr3:160334213..160336560-chr3:160410896..160413841,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207084	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10513554	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs13325080	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1447612	1.00[CEU][hapmap]
rs16831372	1.00[EUR][1000 genomes]
rs59167416	1.00[EUR][1000 genomes]
rs7634059	1.00[CEU][hapmap];0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs9811521	1.00[EUR][1000 genomes]
rs9814292	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9815207	1.00[EUR][1000 genomes]
rs9825674	1.00[EUR][1000 genomes]
rs9825742	1.00[EUR][1000 genomes]
rs9825763	1.00[EUR][1000 genomes]
rs9843371	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9844901	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9845637	1.00[EUR][1000 genomes]
rs9857284	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9862846	1.00[EUR][1000 genomes]
rs9879415	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160410000-160415600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:160411200-160415400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:160412200-160413200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr3:160412400-160413200	Enhancers	Placenta	Placenta
5	chr3:160412600-160413200	Flanking Active TSS	Hela-S3	cervix
6	chr3:160412600-160415600	Weak transcription	Stomach Mucosa	stomach
7	chr3:160412800-160413200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:160412800-160413200	ZNF genes & repeats	Pancreas	Pancrea
9	chr3:160412800-160413200	Enhancers	Right Atrium	heart
10	chr3:160413000-160413200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:160413000-160413200	Enhancers	NH-A	brain

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