Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160425471..160427689-chr3:160937410..160939692,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169251	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10513554	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs13325080	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1447612	1.00[CEU][hapmap]
rs16831372	1.00[EUR][1000 genomes]
rs59167416	1.00[EUR][1000 genomes]
rs7632089	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs7634059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7640802	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs9811521	1.00[EUR][1000 genomes]
rs9814292	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9815207	1.00[EUR][1000 genomes]
rs9825674	1.00[EUR][1000 genomes]
rs9825742	1.00[EUR][1000 genomes]
rs9825763	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9830968	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9843371	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9845637	1.00[EUR][1000 genomes]
rs9857284	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9862846	1.00[EUR][1000 genomes]
rs9879415	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160424600-160427400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:160425600-160426800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:160425600-160427600	Enhancers	Liver	Liver
4	chr3:160426600-160426800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr3:160426600-160428600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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