Variant report

Variant	rs16831372
Chromosome Location	chr3:160417915-160417916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10513554	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs13325080	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1447612	1.00[CEU][hapmap]
rs59167416	1.00[EUR][1000 genomes]
rs7634059	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9811521	1.00[EUR][1000 genomes]
rs9814292	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9815207	1.00[EUR][1000 genomes]
rs9825674	1.00[EUR][1000 genomes]
rs9825742	1.00[EUR][1000 genomes]
rs9825763	1.00[EUR][1000 genomes]
rs9830968	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9843371	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9844901	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9845637	1.00[EUR][1000 genomes]
rs9857284	1.00[CEU][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9862846	1.00[EUR][1000 genomes]
rs9879415	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160416600-160419400	Weak transcription	NHLF	lung
2	chr3:160416600-160421800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:160416800-160418800	Enhancers	Hela-S3	cervix
4	chr3:160416800-160421600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:160417000-160421400	Weak transcription	NH-A	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links