Variant report

Variant	rs9814292
Chromosome Location	chr3:160415552-160415553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160414728..160416837-chr3:161088893..161091045,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196542	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10513554	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13325080	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1447612	1.00[CEU][hapmap]
rs16831372	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59167416	1.00[EUR][1000 genomes]
rs7634059	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9811521	1.00[EUR][1000 genomes]
rs9815207	1.00[EUR][1000 genomes]
rs9825674	1.00[EUR][1000 genomes]
rs9825742	1.00[EUR][1000 genomes]
rs9825763	1.00[EUR][1000 genomes]
rs9830968	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9843371	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9844901	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9845637	1.00[EUR][1000 genomes]
rs9857284	1.00[CEU][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9862846	1.00[EUR][1000 genomes]
rs9879415	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160410000-160415600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:160412600-160415600	Weak transcription	Stomach Mucosa	stomach
3	chr3:160413200-160415600	Weak transcription	Pancreas	Pancrea
4	chr3:160413200-160416400	Enhancers	Hela-S3	cervix
5	chr3:160413600-160417200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:160413800-160416800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:160414200-160417000	Enhancers	NH-A	brain
8	chr3:160414800-160415600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:160415400-160415600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:160415400-160415800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:160415400-160415800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr3:160415400-160416000	Enhancers	Liver	Liver
13	chr3:160415400-160416000	Enhancers	GM12878-XiMat	blood
14	chr3:160415400-160416000	Enhancers	NHDF-Ad	bronchial
15	chr3:160415400-160416200	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr3:160415400-160416400	Enhancers	Osteobl	bone
17	chr3:160415400-160416600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:160415400-160416600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr3:160415400-160416600	Enhancers	NHLF	lung
20	chr3:160415400-160416800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:160415400-160416800	Enhancers	Fetal Heart	heart
22	chr3:160415400-160417000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:160415400-160417000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr3:160415400-160417000	Enhancers	HUVEC	blood vessel

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