Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10513554	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13325080	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1447612	1.00[CEU][hapmap]
rs16831372	1.00[EUR][1000 genomes]
rs59167416	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772563	0.85[ASN][1000 genomes]
rs73877940	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7634059	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9811521	1.00[EUR][1000 genomes]
rs9814292	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9815207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9825674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9825742	1.00[EUR][1000 genomes]
rs9825763	1.00[EUR][1000 genomes]
rs9830968	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9843371	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9844901	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9849216	0.90[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.88[ASN][1000 genomes]
rs9857284	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9862846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9879415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160438200-160443000	Weak transcription	NHEK	skin
2	chr3:160440400-160443000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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