Variant report

Variant	rs9849216
Chromosome Location	chr3:160457351-160457352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16831426	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16831430	1.00[CEU][hapmap];0.90[GIH][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17236599	0.84[EUR][1000 genomes]
rs1947498	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs59167416	0.88[ASN][1000 genomes]
rs6772563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs980430	0.84[EUR][1000 genomes]
rs9815207	0.88[ASN][1000 genomes]
rs9825674	0.88[ASN][1000 genomes]
rs9845637	0.88[ASN][1000 genomes]
rs9862846	0.88[ASN][1000 genomes]
rs9869775	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9879415	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160453600-160462200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:160455800-160458000	Enhancers	Adipose Nuclei	Adipose
3	chr3:160456000-160457400	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr3:160456400-160458200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:160456800-160457400	Enhancers	Left Ventricle	heart
6	chr3:160456800-160457400	Enhancers	Right Atrium	heart
7	chr3:160456800-160457800	Enhancers	Fetal Muscle Leg	muscle
8	chr3:160456800-160457800	Enhancers	Right Ventricle	heart
9	chr3:160456800-160458000	Enhancers	Psoas Muscle	Psoas
10	chr3:160457000-160457400	Enhancers	Brain Substantia Nigra	brain
11	chr3:160457000-160457400	Enhancers	Lung	lung
12	chr3:160457200-160457400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr3:160457200-160458000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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