Variant report

Variant	rs1947498
Chromosome Location	chr3:160453418-160453419
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10513555	0.86[ASN][1000 genomes]
rs16831426	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs16831430	0.90[CEU][hapmap]
rs16831457	0.86[CHB][hapmap]
rs16831473	0.86[CHB][hapmap]
rs17236599	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17826370	0.86[CHB][hapmap]
rs17826376	0.86[CHB][hapmap]
rs6768524	0.86[CHB][hapmap]
rs6772463	0.86[ASN][1000 genomes]
rs6772563	0.84[EUR][1000 genomes]
rs6785392	0.86[ASN][1000 genomes]
rs7618082	0.86[CHB][hapmap]
rs7629154	0.86[CHB][hapmap]
rs980430	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9849216	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs9869775	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160450200-160456800	Weak transcription	Psoas Muscle	Psoas
2	chr3:160452600-160453600	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr3:160453000-160453800	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr3:160453000-160454000	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr3:160453400-160453600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:160453400-160454000	Enhancers	Fetal Brain Male	brain
7	chr3:160453400-160455000	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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