Variant report

Variant	rs16831426
Chromosome Location	chr3:160459498-160459499
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16831430	1.00[CEU][hapmap];0.82[CHB][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17236599	0.84[EUR][1000 genomes]
rs1947498	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs6772563	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs980430	0.84[EUR][1000 genomes]
rs9827509	1.00[ASN][1000 genomes]
rs9837945	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9849216	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9869775	1.00[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160453600-160462200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:160457400-160465000	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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