Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:160458135..160462797-chr3:160469121..160474305,5	K562	blood:
2	chr3:160461139..160463554-chr3:160471803..160474149,3	MCF-7	breast:
3	chr3:160461890..160464961-chr3:160469851..160474568,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163590	Chromatin interaction
ENSG00000260572	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1159747	0.87[CEU][hapmap];0.93[GIH][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap]
rs1378662	0.87[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs1378663	0.87[CEU][hapmap]
rs1455870	0.87[CEU][hapmap];0.93[GIH][hapmap]
rs1455871	0.87[CEU][hapmap];0.93[GIH][hapmap]
rs16831426	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16831430	0.82[CHB][hapmap]
rs16831442	0.87[CEU][hapmap];0.93[GIH][hapmap]
rs16831457	0.87[CEU][hapmap]
rs16831473	0.87[CEU][hapmap]
rs16831516	0.87[CEU][hapmap];0.93[GIH][hapmap]
rs16831520	0.87[CEU][hapmap]
rs17236662	0.87[CEU][hapmap];0.93[GIH][hapmap]
rs17826358	0.87[CEU][hapmap];0.87[GIH][hapmap]
rs17826370	0.87[CEU][hapmap];0.93[GIH][hapmap]
rs17826376	0.87[CEU][hapmap];0.93[GIH][hapmap]
rs2068817	0.87[CEU][hapmap];0.93[GIH][hapmap]
rs4627794	0.87[CEU][hapmap]
rs6768524	0.87[CEU][hapmap]
rs6771910	0.87[CEU][hapmap]
rs6779461	0.87[CEU][hapmap]
rs7618082	0.87[CEU][hapmap];0.93[GIH][hapmap]
rs7629154	0.87[CEU][hapmap];0.93[GIH][hapmap]
rs7633401	0.87[CEU][hapmap]
rs9827509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160457400-160465000	Weak transcription	Right Atrium	heart
2	chr3:160462200-160463000	Enhancers	Pancreatic Islets	Pancreatic Islet

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