Variant report

Variant	rs1563385
Chromosome Location	chr3:160470941-160470942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:160465269..160467345-chr3:160469574..160471623,2	MCF-7	breast:
2	chr3:160282301..160284425-chr3:160469832..160472498,3	K562	blood:
3	chr3:160467646..160471056-chr3:160471493..160474587,3	K562	blood:

Variant related genes	Relation type
ENSG00000229320	Chromatin interaction
ENSG00000163590	Chromatin interaction
ENSG00000186432	Chromatin interaction
ENSG00000260572	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56141969	1.00[ASN][1000 genomes]
rs724961	0.91[ASN][1000 genomes]
rs7632089	1.00[ASN][1000 genomes]
rs7640802	1.00[ASN][1000 genomes]
rs9825763	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160465400-160471400	Weak transcription	Fetal Brain Male	brain
2	chr3:160465800-160472200	Weak transcription	Hela-S3	cervix
3	chr3:160466000-160471200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:160466000-160472000	Weak transcription	Gastric	stomach
5	chr3:160466000-160472000	Weak transcription	Psoas Muscle	Psoas
6	chr3:160466200-160471200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:160466200-160471400	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:160466200-160472000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr3:160466200-160472000	Weak transcription	Left Ventricle	heart
10	chr3:160466400-160471200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:160466400-160471200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:160466400-160471400	Weak transcription	Adipose Nuclei	Adipose
13	chr3:160466400-160471400	Weak transcription	Brain Substantia Nigra	brain
14	chr3:160466800-160471400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:160467200-160471200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:160467400-160471600	Weak transcription	Liver	Liver
17	chr3:160467400-160472000	Weak transcription	Pancreas	Pancrea
18	chr3:160468800-160471800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr3:160469000-160471400	Weak transcription	Fetal Stomach	stomach
20	chr3:160469600-160472200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:160470000-160471400	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr3:160470200-160472200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr3:160470600-160471200	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr3:160470600-160471600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr3:160470600-160471800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr3:160470600-160472000	Enhancers	Brain Anterior Caudate	brain
27	chr3:160470800-160471800	Enhancers	Brain Angular Gyrus	brain

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