The 2.0 version of rSNPBase

Variant report

Variant rs73880378
Chromosome Location chr22:28444633-28444634
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:28431200-28449600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
2 chr22:28431200-28459600 Weak transcription Aorta Aorta
3 chr22:28431600-28447600 Weak transcription Fetal Brain Female brain
4 chr22:28432000-28447600 Weak transcription Fetal Brain Male brain
5 chr22:28432000-28469000 Weak transcription Primary T cells from cord blood blood
6 chr22:28439600-28449800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
7 chr22:28439800-28450000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
8 chr22:28440000-28447800 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr22:28440000-28450000 Weak transcription Ovary ovary
10 chr22:28440200-28449200 Weak transcription Colon Smooth Muscle Colon
11 chr22:28440200-28449800 Weak transcription Stomach Smooth Muscle stomach
12 chr22:28440200-28450000 Weak transcription NHDF-Ad bronchial
13 chr22:28440400-28444800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr22:28440400-28449400 Weak transcription NHLF lung
15 chr22:28441000-28452200 Weak transcription Fetal Intestine Large intestine
16 chr22:28441400-28448200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr22:28442200-28446400 Strong transcription Dnd41 blood
18 chr22:28442800-28445800 Enhancers Right Atrium heart
19 chr22:28442800-28446000 Enhancers Spleen Spleen
20 chr22:28443000-28445200 Strong transcription Fetal Stomach stomach
21 chr22:28443000-28445400 Enhancers Lung lung
22 chr22:28443000-28445800 Strong transcription Fetal Intestine Small intestine
23 chr22:28443200-28444800 Genic enhancers Fetal Adrenal Gland Adrenal Gland
24 chr22:28443200-28445800 Enhancers Left Ventricle heart
25 chr22:28443600-28444800 Weak transcription Pancreas Pancrea
26 chr22:28443600-28445000 Weak transcription Fetal Muscle Trunk muscle
27 chr22:28443600-28445200 Enhancers Right Ventricle heart
28 chr22:28443800-28444800 Weak transcription Esophagus oesophagus
29 chr22:28443800-28445800 Enhancers Primary hematopoietic stem cells blood
30 chr22:28443800-28445800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr22:28443800-28446400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
32 chr22:28443800-28447600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr22:28443800-28459200 Weak transcription Breast Myoepithelial Primary Cells Breast
34 chr22:28444000-28445200 Enhancers Stomach Mucosa stomach
35 chr22:28444000-28447200 Weak transcription Cortex derived primary cultured neurospheres brain
36 chr22:28444200-28445000 Enhancers Placenta Placenta
37 chr22:28444200-28445000 Enhancers Thymus Thymus
38 chr22:28444200-28445400 Enhancers Fetal Muscle Leg muscle
39 chr22:28444200-28445800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr22:28444200-28448200 Weak transcription iPS-15b Cell Line embryonic stem cell
41 chr22:28444400-28445000 Enhancers Fetal Lung lung
42 chr22:28444400-28458800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr22:28444600-28448600 Weak transcription Fetal Kidney kidney
44 chr22:28444600-28448800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
45 chr22:28444600-28449000 Weak transcription Adipose Nuclei Adipose
46 chr22:28444600-28449800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015