Variant report

Variant	rs73880379
Chromosome Location	chr22:28444843-28444844
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs55802118	1.00[AFR][1000 genomes]
rs56051821	1.00[AFR][1000 genomes]
rs56185522	0.88[AFR][1000 genomes]
rs58519712	0.83[AFR][1000 genomes]
rs60418495	1.00[AFR][1000 genomes]
rs73880343	0.83[AFR][1000 genomes]
rs73880346	0.83[AFR][1000 genomes]
rs73880366	1.00[AFR][1000 genomes]
rs73880368	1.00[AFR][1000 genomes]
rs73880378	1.00[AFR][1000 genomes]
rs73880380	1.00[AFR][1000 genomes]
rs73880391	0.94[AFR][1000 genomes]
rs73880394	0.80[AFR][1000 genomes]
rs73880400	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28431200-28449600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr22:28431200-28459600	Weak transcription	Aorta	Aorta
3	chr22:28431600-28447600	Weak transcription	Fetal Brain Female	brain
4	chr22:28432000-28447600	Weak transcription	Fetal Brain Male	brain
5	chr22:28432000-28469000	Weak transcription	Primary T cells from cord blood	blood
6	chr22:28439600-28449800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr22:28439800-28450000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr22:28440000-28447800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr22:28440000-28450000	Weak transcription	Ovary	ovary
10	chr22:28440200-28449200	Weak transcription	Colon Smooth Muscle	Colon
11	chr22:28440200-28449800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr22:28440200-28450000	Weak transcription	NHDF-Ad	bronchial
13	chr22:28440400-28449400	Weak transcription	NHLF	lung
14	chr22:28441000-28452200	Weak transcription	Fetal Intestine Large	intestine
15	chr22:28441400-28448200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr22:28442200-28446400	Strong transcription	Dnd41	blood
17	chr22:28442800-28445800	Enhancers	Right Atrium	heart
18	chr22:28442800-28446000	Enhancers	Spleen	Spleen
19	chr22:28443000-28445200	Strong transcription	Fetal Stomach	stomach
20	chr22:28443000-28445400	Enhancers	Lung	lung
21	chr22:28443000-28445800	Strong transcription	Fetal Intestine Small	intestine
22	chr22:28443200-28445800	Enhancers	Left Ventricle	heart
23	chr22:28443600-28445000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr22:28443600-28445200	Enhancers	Right Ventricle	heart
25	chr22:28443800-28445800	Enhancers	Primary hematopoietic stem cells	blood
26	chr22:28443800-28445800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr22:28443800-28446400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr22:28443800-28447600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr22:28443800-28459200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr22:28444000-28445200	Enhancers	Stomach Mucosa	stomach
31	chr22:28444000-28447200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr22:28444200-28445000	Enhancers	Placenta	Placenta
33	chr22:28444200-28445000	Enhancers	Thymus	Thymus
34	chr22:28444200-28445400	Enhancers	Fetal Muscle Leg	muscle
35	chr22:28444200-28445800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr22:28444200-28448200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr22:28444400-28445000	Enhancers	Fetal Lung	lung
38	chr22:28444400-28458800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr22:28444600-28448600	Weak transcription	Fetal Kidney	kidney
40	chr22:28444600-28448800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr22:28444600-28449000	Weak transcription	Adipose Nuclei	Adipose
42	chr22:28444600-28449800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr22:28444800-28445000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr22:28444800-28445200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr22:28444800-28445200	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr22:28444800-28445200	Enhancers	Esophagus	oesophagus
47	chr22:28444800-28445200	Enhancers	Pancreas	Pancrea
48	chr22:28444800-28445400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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