Variant report

Variant	rs73881975
Chromosome Location	chr22:33555104-33555105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr22:33555014-33555196	K562	blood:	n/a	chr22:33555136-33555149 chr22:33555135-33555148 chr22:33555133-33555142 chr22:33555136-33555149 chr22:33555137-33555146
2	SPI1	chr22:33554990-33555246	HL-60	blood:	n/a	chr22:33555136-33555149 chr22:33555135-33555148 chr22:33555133-33555142 chr22:33555136-33555149 chr22:33555137-33555146
3	SPI1	chr22:33555024-33555237	GM12878	blood:	n/a	chr22:33555136-33555149 chr22:33555135-33555148 chr22:33555133-33555142 chr22:33555136-33555149 chr22:33555137-33555146
4	SPI1	chr22:33555023-33555245	GM12891	blood:	n/a	chr22:33555136-33555149 chr22:33555135-33555148 chr22:33555133-33555142 chr22:33555136-33555149 chr22:33555137-33555146
5	SPI1	chr22:33554975-33555317	HL-60	blood:	n/a	chr22:33555136-33555149 chr22:33555135-33555148 chr22:33555133-33555142 chr22:33555136-33555149 chr22:33555137-33555146

Variant related genes	Relation type
ENSG00000232073	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12484035	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12484047	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12484183	1.00[AFR][1000 genomes]
rs12485184	1.00[AFR][1000 genomes]
rs16991908	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56904467	1.00[AFR][1000 genomes]
rs56951294	1.00[AFR][1000 genomes]
rs59005836	1.00[AFR][1000 genomes]
rs73881963	0.84[AMR][1000 genomes]
rs73881964	0.84[AMR][1000 genomes]
rs73881976	1.00[AFR][1000 genomes]
rs73881977	1.00[AFR][1000 genomes]
rs73881983	1.00[AFR][1000 genomes]
rs73881985	1.00[AFR][1000 genomes]
rs73881986	1.00[AFR][1000 genomes]
rs73881988	1.00[AFR][1000 genomes]
rs73881996	1.00[AFR][1000 genomes]
rs73881998	1.00[AFR][1000 genomes]
rs73881999	1.00[AFR][1000 genomes]
rs73882000	1.00[AFR][1000 genomes]
rs73882002	1.00[AFR][1000 genomes]
rs73885003	1.00[AFR][1000 genomes]
rs73885005	1.00[AFR][1000 genomes]
rs73885008	1.00[AFR][1000 genomes]
rs73885016	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv948523	chr22:33414164-34098417	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv1067068	chr22:33452180-33851033	Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
4	nsv914982	chr22:33512743-33558767	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv1056019	chr22:33527873-33657289	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv933455	chr22:33532697-33915429	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv964557	chr22:33549670-33560098	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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