Variant report
Variant | rs73881977 |
---|---|
Chromosome Location | chr22:33576164-33576165 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11089614 | 0.91[EUR][1000 genomes] |
rs12484032 | 0.80[AMR][1000 genomes] |
rs12484183 | 1.00[AFR][1000 genomes];0.90[EUR][1000 genomes] |
rs12485184 | 1.00[AFR][1000 genomes] |
rs17794273 | 0.91[EUR][1000 genomes] |
rs56904467 | 1.00[AFR][1000 genomes] |
rs56951294 | 1.00[AFR][1000 genomes];0.95[EUR][1000 genomes] |
rs59005836 | 1.00[AFR][1000 genomes] |
rs73881975 | 1.00[AFR][1000 genomes] |
rs73881976 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs73881983 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs73881985 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs73881986 | 1.00[AFR][1000 genomes] |
rs73881988 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs73881996 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs73881998 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs73881999 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs73882000 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs73882002 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs73885003 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs73885005 | 1.00[AFR][1000 genomes];0.95[EUR][1000 genomes] |
rs73885008 | 1.00[AFR][1000 genomes] |
rs73885016 | 1.00[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv531587 | chr22:33346710-33809338 | Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 38 gene(s) | inside rSNPs | diseases |
2 | nsv948523 | chr22:33414164-34098417 | Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 34 gene(s) | inside rSNPs | diseases |
3 | nsv1067068 | chr22:33452180-33851033 | Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 32 gene(s) | inside rSNPs | diseases |
4 | nsv1056019 | chr22:33527873-33657289 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv933455 | chr22:33532697-33915429 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
6 | nsv528580 | chr22:33575820-33578150 | Enhancers | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr22:33576000-33576800 | Enhancers | Fetal Brain Female | brain |
2 | chr22:33576000-33577200 | Enhancers | Fetal Brain Male | brain |