Variant report

Variant	rs73882772
Chromosome Location	chr22:28915487-28915488
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16986587	1.00[AMR][1000 genomes]
rs17880568	1.00[AMR][1000 genomes]
rs57647002	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60477954	1.00[AMR][1000 genomes]
rs73882718	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73882741	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73882751	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73882753	1.00[AMR][1000 genomes]
rs73882769	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73882787	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28908800-28917400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr22:28910800-28916600	Weak transcription	Ovary	ovary
3	chr22:28911000-28917000	Weak transcription	Adipose Nuclei	Adipose
4	chr22:28911000-28917600	Weak transcription	NHDF-Ad	bronchial
5	chr22:28911600-28915600	Weak transcription	Fetal Brain Female	brain
6	chr22:28913400-28923800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr22:28915000-28915600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr22:28915400-28915800	Enhancers	NHLF	lung
9	chr22:28915400-28916000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr22:28915400-28916600	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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