Variant report

Variant	rs73882787
Chromosome Location	chr22:28990958-28990959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:28415721..28416686-chr22:28990407..28991330,6	K562	blood:
2	chr22:28415730..28416730-chr22:28990429..28991381,8	MCF-7	breast:
3	chr22:28989732..28992397-chr22:28995428..28996933,2	K562	blood:
4	chr22:28649021..28649823-chr22:28990464..28991307,3	MCF-7	breast:
5	chr22:28447463..28448665-chr22:28990496..28991323,4	MCF-7	breast:
6	chr22:28447846..28448403-chr22:28990448..28991276,4	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16986587	1.00[AMR][1000 genomes]
rs17880568	1.00[AMR][1000 genomes]
rs60477954	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73882741	1.00[AMR][1000 genomes]
rs73882751	1.00[AMR][1000 genomes]
rs73882753	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73882769	1.00[AMR][1000 genomes]
rs73882772	1.00[AMR][1000 genomes]
rs73882788	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28956800-28993200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr22:28967800-28991600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr22:28967800-28997600	Weak transcription	HepG2	liver
4	chr22:28979200-28991400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr22:28979200-28993600	Weak transcription	Fetal Stomach	stomach
6	chr22:28988800-28991400	Enhancers	Dnd41	blood
7	chr22:28989800-28991200	Weak transcription	A549	lung
8	chr22:28990400-28991200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr22:28990400-28991400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr22:28990400-28991600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr22:28990400-28991600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr22:28990600-28991200	Enhancers	Brain Cingulate Gyrus	brain
13	chr22:28990600-28991200	Enhancers	Brain Substantia Nigra	brain
14	chr22:28990600-28991400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr22:28990600-28991400	Enhancers	Brain Anterior Caudate	brain
16	chr22:28990600-28991400	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr22:28990600-28991400	Enhancers	Colon Smooth Muscle	Colon
18	chr22:28990600-28991400	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr22:28990600-28991400	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr22:28990600-28991400	Enhancers	Fetal Lung	lung
21	chr22:28990600-28991400	Enhancers	NHLF	lung
22	chr22:28990600-28991600	Enhancers	NH-A	brain
23	chr22:28990600-28991600	Enhancers	NHDF-Ad	bronchial
24	chr22:28990600-28993200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr22:28990600-28994000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr22:28990800-28992400	Enhancers	HUVEC	blood vessel

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