Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11914894	1.00[EUR][1000 genomes]
rs11929255	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11929256	1.00[EUR][1000 genomes]
rs1608798	1.00[EUR][1000 genomes]
rs2091272	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2177724	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28563002	1.00[AMR][1000 genomes]
rs6800776	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6810369	1.00[EUR][1000 genomes]
rs73885426	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73885427	1.00[EUR][1000 genomes]
rs73885431	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9814266	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9818608	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9820212	1.00[EUR][1000 genomes]
rs9833625	1.00[EUR][1000 genomes]
rs9838211	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9841350	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9842185	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9850267	1.00[AMR][1000 genomes]
rs9857266	1.00[EUR][1000 genomes]
rs9858261	1.00[EUR][1000 genomes]
rs9859636	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9876952	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9878194	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534210	chr3:179666123-179899347	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv878040	chr3:179823887-180128288	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179885400-179898200	Weak transcription	HMEC	breast
2	chr3:179896800-179898400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:179896800-179898800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:179897000-179898200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr3:179897000-179898200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr3:179897000-179898200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:179897000-179898600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr3:179897000-179899000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr3:179897000-179899200	Enhancers	Adipose Nuclei	Adipose
10	chr3:179897200-179898400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:179897400-179898400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:179897800-179898800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:179897800-179899000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr3:179897800-179899800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:179897800-179900000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:179898000-179899200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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