Variant report
| Variant | rs9858261 |
|---|---|
| Chromosome Location | chr3:179882105-179882106 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11914894 | 0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11929255 | 1.00[EUR][1000 genomes] |
| rs11929256 | 1.00[EUR][1000 genomes] |
| rs1608798 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2091272 | 1.00[EUR][1000 genomes] |
| rs2177724 | 1.00[EUR][1000 genomes] |
| rs6800776 | 1.00[EUR][1000 genomes] |
| rs6810369 | 1.00[EUR][1000 genomes] |
| rs73885426 | 1.00[EUR][1000 genomes] |
| rs73885427 | 1.00[EUR][1000 genomes] |
| rs73885431 | 1.00[EUR][1000 genomes] |
| rs73885436 | 1.00[EUR][1000 genomes] |
| rs9814266 | 1.00[EUR][1000 genomes] |
| rs9818608 | 1.00[EUR][1000 genomes] |
| rs9820212 | 0.80[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9833625 | 1.00[EUR][1000 genomes] |
| rs9838211 | 1.00[EUR][1000 genomes] |
| rs9841350 | 1.00[EUR][1000 genomes] |
| rs9842185 | 1.00[EUR][1000 genomes] |
| rs9857266 | 1.00[EUR][1000 genomes] |
| rs9859636 | 1.00[EUR][1000 genomes] |
| rs9878194 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534210 | chr3:179666123-179899347 | Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1012271 | chr3:179806875-180234871 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv878040 | chr3:179823887-180128288 | Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:179865600-179886800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
