Variant report
| Variant | rs73885477 |
|---|---|
| Chromosome Location | chr3:180003927-180003928 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:180002525..180004570-chr3:180012107..180014551,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs55680337 | 1.00[AFR][1000 genomes] |
| rs56110104 | 0.91[AFR][1000 genomes] |
| rs56141920 | 1.00[AFR][1000 genomes] |
| rs56190916 | 1.00[AFR][1000 genomes] |
| rs56245654 | 1.00[AFR][1000 genomes] |
| rs57833809 | 1.00[AFR][1000 genomes] |
| rs73883803 | 1.00[AFR][1000 genomes] |
| rs73885446 | 1.00[AFR][1000 genomes] |
| rs73885450 | 1.00[AFR][1000 genomes] |
| rs73885451 | 1.00[AFR][1000 genomes] |
| rs73885452 | 1.00[AFR][1000 genomes] |
| rs73885455 | 1.00[AFR][1000 genomes] |
| rs73885459 | 1.00[AFR][1000 genomes] |
| rs73885468 | 1.00[AFR][1000 genomes] |
| rs73885474 | 1.00[AFR][1000 genomes] |
| rs73885478 | 1.00[AFR][1000 genomes] |
| rs73885479 | 1.00[AFR][1000 genomes] |
| rs73885482 | 1.00[AFR][1000 genomes] |
| rs73885487 | 1.00[AFR][1000 genomes] |
| rs73885491 | 1.00[AFR][1000 genomes] |
| rs73885492 | 1.00[AFR][1000 genomes] |
| rs73885497 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1012271 | chr3:179806875-180234871 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv878040 | chr3:179823887-180128288 | Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv997388 | chr3:179899279-180172349 | Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv536817 | chr3:179899279-180172349 | Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 5 | nsv878041 | chr3:179983857-180097855 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv967236 | chr3:180003198-180007652 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:180002800-180013600 | Weak transcription | HMEC | breast |
| 2 | chr3:180003400-180013600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
