Variant report

Variant	rs73885482
Chromosome Location	chr3:180024346-180024347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs55680337	1.00[AFR][1000 genomes]
rs56110104	0.91[AFR][1000 genomes]
rs56141920	1.00[AFR][1000 genomes]
rs56190916	1.00[AFR][1000 genomes]
rs56245654	1.00[AFR][1000 genomes]
rs57833809	1.00[AFR][1000 genomes]
rs73883803	1.00[AFR][1000 genomes]
rs73885446	1.00[AFR][1000 genomes]
rs73885450	1.00[AFR][1000 genomes]
rs73885451	1.00[AFR][1000 genomes]
rs73885452	1.00[AFR][1000 genomes]
rs73885455	1.00[AFR][1000 genomes]
rs73885459	1.00[AFR][1000 genomes]
rs73885468	1.00[AFR][1000 genomes]
rs73885474	1.00[AFR][1000 genomes]
rs73885477	1.00[AFR][1000 genomes]
rs73885478	1.00[AFR][1000 genomes]
rs73885479	1.00[AFR][1000 genomes]
rs73885487	1.00[AFR][1000 genomes]
rs73885491	1.00[AFR][1000 genomes]
rs73885492	1.00[AFR][1000 genomes]
rs73885497	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv878040	chr3:179823887-180128288	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997388	chr3:179899279-180172349	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv536817	chr3:179899279-180172349	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv878041	chr3:179983857-180097855	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180016600-180024400	Weak transcription	Ovary	ovary
2	chr3:180021400-180024400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:180024000-180025000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:180024000-180025800	Enhancers	HMEC	breast
5	chr3:180024200-180025600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links