Variant report

Variant	rs73891224
Chromosome Location	chr3:195904699-195904700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:195801020..195810289-chr3:195902611..195915225,28	K562	blood:
2	chr3:195793504..195812987-chr3:195901613..195938073,113	K562	blood:
3	chr3:195903618..195905705-chr3:195906197..195908381,3	K562	blood:
4	chr3:195871243..195872835-chr3:195903079..195904769,2	K562	blood:
5	chr3:195799311..195801331-chr3:195903536..195907265,3	MCF-7	breast:
6	chr3:195894083..195898677-chr3:195900136..195905272,5	K562	blood:
7	chr3:195865618..195868542-chr3:195904431..195907406,2	MCF-7	breast:
8	chr3:195807384..195810021-chr3:195902764..195905318,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000252174	Chromatin interaction
ENSG00000072274	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs56699931	0.95[EUR][1000 genomes]
rs56850780	0.81[EUR][1000 genomes]
rs59412512	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60526982	0.91[EUR][1000 genomes]
rs6770218	0.91[EUR][1000 genomes]
rs73210076	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73210077	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73210078	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73210081	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73210084	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73210095	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73212105	0.95[EUR][1000 genomes]
rs73212119	0.90[EUR][1000 genomes]
rs73212122	0.93[EUR][1000 genomes]
rs73212124	0.93[EUR][1000 genomes]
rs73212127	0.95[EUR][1000 genomes]
rs870070	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759213	chr3:195102787-196071593	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	esv2757913	chr3:195379484-196071593	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv532213	chr3:195643944-196063636	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv997797	chr3:195658360-196212958	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
5	nsv878171	chr3:195677895-195959924	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
6	nsv1008512	chr3:195709662-195974936	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
7	nsv1002584	chr3:195734933-195910772	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
8	nsv432543	chr3:195746690-196015690	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
9	nsv532214	chr3:195762648-195916068	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
10	nsv1009105	chr3:195769609-195984388	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
11	nsv461130	chr3:195776240-195907653	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
12	nsv593069	chr3:195776240-195907653	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
13	nsv1005558	chr3:195789462-195919077	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
14	nsv536890	chr3:195789462-195919077	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
15	nsv998042	chr3:195840858-195934070	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
16	nsv1009811	chr3:195851796-196138071	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
17	nsv593070	chr3:195854279-195924203	Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
18	nsv878174	chr3:195858887-195949541	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
19	nsv461131	chr3:195858887-196072442	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
20	nsv593071	chr3:195858887-196072442	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
21	nsv1004194	chr3:195864466-195919077	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
22	nsv536891	chr3:195864466-195919077	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
23	nsv1009178	chr3:195864466-196081670	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
24	nsv536892	chr3:195864466-196081670	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
25	nsv1003550	chr3:195885340-196159824	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
26	nsv536893	chr3:195885340-196159824	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:195887600-195905600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:195891200-195905600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:195891800-195905600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:195891800-195906200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:195896800-195905600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:195897000-195909000	Weak transcription	Spleen	Spleen
7	chr3:195897200-195906600	Weak transcription	Pancreas	Pancrea
8	chr3:195898400-195906400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:195901400-195905200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr3:195901400-195911800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr3:195902400-195905800	Weak transcription	Brain Germinal Matrix	brain
12	chr3:195902400-195906000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:195902400-195906000	Weak transcription	HSMM	muscle
14	chr3:195902400-195906200	Weak transcription	HSMMtube	muscle
15	chr3:195902600-195904800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr3:195902600-195906000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr3:195902600-195906200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr3:195902600-195906200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:195902800-195904800	Weak transcription	Fetal Thymus	thymus
20	chr3:195902800-195905800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:195902800-195905800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr3:195902800-195906000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr3:195902800-195906200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr3:195902800-195906400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr3:195903000-195906000	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr3:195904000-195907200	Enhancers	Fetal Intestine Large	intestine
27	chr3:195904200-195904800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
28	chr3:195904200-195905200	Enhancers	K562	blood
29	chr3:195904200-195906200	Enhancers	Duodenum Mucosa	Duodenum
30	chr3:195904200-195907200	Enhancers	Fetal Intestine Small	intestine
31	chr3:195904400-195904800	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr3:195904400-195904800	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr3:195904400-195904800	Enhancers	Adipose Nuclei	Adipose
34	chr3:195904400-195904800	Enhancers	Colonic Mucosa	Colon
35	chr3:195904400-195905000	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr3:195904400-195905000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:195904400-195905800	Enhancers	Liver	Liver
38	chr3:195904400-195907200	Enhancers	Stomach Mucosa	stomach
39	chr3:195904400-195909400	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr3:195904600-195904800	Active TSS	Rectal Mucosa Donor 29	rectum
41	chr3:195904600-195904800	Flanking Active TSS	HepG2	liver
42	chr3:195904600-195905000	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr3:195904600-195905000	Weak transcription	Psoas Muscle	Psoas
44	chr3:195904600-195906000	Weak transcription	Brain Angular Gyrus	brain
45	chr3:195904600-195906200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr3:195904600-195906200	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr3:195904600-195906200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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