Variant report

Variant	rs73891298
Chromosome Location	chr3:196316246-196316247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:196308524..196310662-chr3:196315785..196317818,3	MCF-7	breast:
2	chr3:196310004..196313820-chr3:196314591..196318789,6	K562	blood:
3	chr3:196314405..196316844-chr3:196326704..196328249,2	K562	blood:
4	chr3:196315942..196318689-chr3:196333300..196336073,2	K562	blood:
5	chr3:196315289..196317819-chr3:196696411..196698242,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13325541	1.00[AMR][1000 genomes]
rs73891290	1.00[AMR][1000 genomes]
rs73891292	1.00[AMR][1000 genomes]
rs73891293	1.00[AMR][1000 genomes]
rs73891294	1.00[AMR][1000 genomes]
rs73891296	1.00[AMR][1000 genomes]
rs73891300	1.00[AMR][1000 genomes]
rs9861294	1.00[AMR][1000 genomes]
rs9874250	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003194	chr3:195960270-196342423	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv536894	chr3:195960270-196342423	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1003066	chr3:196098763-196414159	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv948681	chr3:196148055-197007546	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
5	nsv1010483	chr3:196210054-196319543	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv536896	chr3:196210054-196319543	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv1014692	chr3:196242249-196531824	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
8	nsv878187	chr3:196245603-196554790	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
9	nsv491864	chr3:196263064-196468533	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
10	nsv829828	chr3:196268121-196463641	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	nsv1010643	chr3:196288064-196788645	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
12	nsv878188	chr3:196312124-196553867	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:196296600-196320200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:196296800-196316800	Weak transcription	Right Ventricle	heart
3	chr3:196297000-196317000	Weak transcription	NHLF	lung
4	chr3:196297000-196317800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:196297000-196318000	Weak transcription	Colonic Mucosa	Colon
6	chr3:196297000-196320400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:196297200-196316800	Weak transcription	Brain Angular Gyrus	brain
8	chr3:196297200-196323000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr3:196297400-196318800	Weak transcription	Pancreas	Pancrea
10	chr3:196298000-196319400	Weak transcription	Fetal Brain Male	brain
11	chr3:196303400-196316400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:196305600-196320000	Weak transcription	NHDF-Ad	bronchial
13	chr3:196306400-196317800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr3:196306600-196325000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr3:196308000-196316800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr3:196308000-196317400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:196308000-196320000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:196309200-196319600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:196309200-196322200	Weak transcription	Fetal Intestine Small	intestine
20	chr3:196309200-196323000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:196311400-196319200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr3:196311400-196320400	Weak transcription	Gastric	stomach
23	chr3:196311600-196316400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr3:196311600-196316800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr3:196311600-196316800	Weak transcription	GM12878-XiMat	blood
26	chr3:196311600-196317200	Weak transcription	Psoas Muscle	Psoas
27	chr3:196311600-196317200	Weak transcription	NHEK	skin
28	chr3:196311600-196317400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr3:196311600-196317600	Weak transcription	Placenta	Placenta
30	chr3:196311600-196318000	Weak transcription	Ovary	ovary
31	chr3:196311600-196323000	Weak transcription	Esophagus	oesophagus
32	chr3:196311600-196324800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr3:196312000-196317600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr3:196312000-196319800	Weak transcription	HSMMtube	muscle
35	chr3:196312000-196323000	Weak transcription	K562	blood
36	chr3:196312200-196317400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr3:196312600-196316800	Weak transcription	Brain Hippocampus Middle	brain
38	chr3:196312800-196324800	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr3:196313000-196317400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr3:196313200-196316400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr3:196313600-196317600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr3:196313600-196318000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr3:196313600-196318600	Weak transcription	Fetal Muscle Leg	muscle
44	chr3:196313600-196319800	Weak transcription	Fetal Thymus	thymus
45	chr3:196313600-196322600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr3:196313600-196323600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr3:196313800-196316600	Weak transcription	Fetal Intestine Large	intestine
48	chr3:196313800-196317000	Weak transcription	Lung	lung
49	chr3:196313800-196317200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr3:196313800-196317400	Weak transcription	Adipose Nuclei	Adipose

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