Variant report

Variant	rs73891300
Chromosome Location	chr3:196317892-196317893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:196310004..196313820-chr3:196314591..196318789,6	K562	blood:
2	chr3:196315942..196318689-chr3:196333300..196336073,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13325541	1.00[AMR][1000 genomes]
rs73891290	1.00[AMR][1000 genomes]
rs73891292	1.00[AMR][1000 genomes]
rs73891293	1.00[AMR][1000 genomes]
rs73891294	1.00[AMR][1000 genomes]
rs73891296	1.00[AMR][1000 genomes]
rs73891298	1.00[AMR][1000 genomes]
rs9861294	1.00[AMR][1000 genomes]
rs9874250	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003194	chr3:195960270-196342423	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv536894	chr3:195960270-196342423	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1003066	chr3:196098763-196414159	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv948681	chr3:196148055-197007546	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
5	nsv1010483	chr3:196210054-196319543	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv536896	chr3:196210054-196319543	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv1014692	chr3:196242249-196531824	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
8	nsv878187	chr3:196245603-196554790	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
9	nsv491864	chr3:196263064-196468533	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
10	nsv829828	chr3:196268121-196463641	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	nsv1010643	chr3:196288064-196788645	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
12	nsv878188	chr3:196312124-196553867	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:196296600-196320200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:196297000-196318000	Weak transcription	Colonic Mucosa	Colon
3	chr3:196297000-196320400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:196297200-196323000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:196297400-196318800	Weak transcription	Pancreas	Pancrea
6	chr3:196298000-196319400	Weak transcription	Fetal Brain Male	brain
7	chr3:196305600-196320000	Weak transcription	NHDF-Ad	bronchial
8	chr3:196306600-196325000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr3:196308000-196320000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:196309200-196319600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:196309200-196322200	Weak transcription	Fetal Intestine Small	intestine
12	chr3:196309200-196323000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:196311400-196319200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:196311400-196320400	Weak transcription	Gastric	stomach
15	chr3:196311600-196318000	Weak transcription	Ovary	ovary
16	chr3:196311600-196323000	Weak transcription	Esophagus	oesophagus
17	chr3:196311600-196324800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr3:196312000-196319800	Weak transcription	HSMMtube	muscle
19	chr3:196312000-196323000	Weak transcription	K562	blood
20	chr3:196312800-196324800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr3:196313600-196318000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr3:196313600-196318600	Weak transcription	Fetal Muscle Leg	muscle
23	chr3:196313600-196319800	Weak transcription	Fetal Thymus	thymus
24	chr3:196313600-196322600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr3:196313600-196323600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr3:196313800-196318200	Weak transcription	Left Ventricle	heart
27	chr3:196313800-196320200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:196313800-196320400	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr3:196313800-196323800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr3:196313800-196324600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr3:196314000-196322800	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr3:196314000-196323400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr3:196314000-196323400	Weak transcription	Thymus	Thymus
34	chr3:196314000-196324800	Weak transcription	Primary T cells from cord blood	blood
35	chr3:196314000-196324800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr3:196314200-196318800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:196314200-196323000	Weak transcription	Hela-S3	cervix
38	chr3:196314200-196324400	Weak transcription	Dnd41	blood
39	chr3:196314600-196319800	Weak transcription	Primary B cells from cord blood	blood
40	chr3:196314600-196321200	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr3:196314800-196322800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr3:196315400-196319600	Weak transcription	Brain Germinal Matrix	brain
43	chr3:196315400-196323000	Weak transcription	Fetal Stomach	stomach
44	chr3:196315800-196318400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr3:196315800-196322800	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr3:196317200-196318000	Enhancers	Psoas Muscle	Psoas
47	chr3:196317400-196319400	Active TSS	Skeletal Muscle Male	skeletal muscle

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