Variant report

Variant	rs73891914
Chromosome Location	chr21:16325548-16325549
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56214311	1.00[ASN][1000 genomes]
rs60997304	1.00[ASN][1000 genomes]
rs73170284	1.00[ASN][1000 genomes]
rs73170289	1.00[ASN][1000 genomes]
rs73170291	1.00[ASN][1000 genomes]
rs73170302	1.00[ASN][1000 genomes]
rs73172303	1.00[ASN][1000 genomes]
rs73172306	1.00[ASN][1000 genomes]
rs8130221	1.00[ASN][1000 genomes]
rs9789839	1.00[ASN][1000 genomes]
rs9789846	1.00[ASN][1000 genomes]
rs9789848	1.00[ASN][1000 genomes]
rs9808640	1.00[ASN][1000 genomes]
rs9808710	1.00[ASN][1000 genomes]
rs9985141	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060151	chr21:16295713-16435497	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv544378	chr21:16295713-16435497	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv834048	chr21:16324481-16489570	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16313200-16334800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr21:16315600-16338000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr21:16322400-16328000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr21:16322400-16339200	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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